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Adenosine Intelligence Fuels All Molecular Tags
Cells make their largest decisions at a few regulatory hubs: AMPK, which senses energy; mTOR, which decides whether to grow; p53, which guards the genome; and NF-κB, which coordinates inflammation and immunity. These hubs regulate one another in a web rather than a chain of command, but they have something in common. AMPK reads the ratio of AMP and ADP to ATP directly. mTOR checks the supply of S-adenosylmethionine through a dedicated sensor. p53 carries acetyl, methyl, ubiqu
jonlieff
Oct 1511 min read


Adenosine Intelligence Beneath the Ubiquitin Cellular Language
A Handle, Not Just a Fuel Most people know adenosine triphosphate, ATP, as the cell’s fuel. Fewer know that the same adenosine unit sits inside many of the cell’s most vital molecules that carry electrons, methyl groups and acetyl groups, inside the letters of RNA and DNA, inside the signals that cells send one another, and inside the folded architecture of RNA itself. The repeated use of one small molecule for so many unrelated jobs is a clue to the deep history of life and
jonlieff
Oct 78 min read


The Dance of AMPK
How Molecular Motion Allows Cells to Sense and Communicate About Energy Every living cell must constantly answer the fundamental question whether it has enough energy to grow, or must it conserve resources to survive? The molecule responsible for answering that question is AMPK, the AMP-activated protein kinase. AMPK acts as a cellular energy sensor and regulator that monitors energy levels by responding to changes in the ratios of AMP to ATP and ADP to ATP inside cells. At f
jonlieff
Sep 65 min read


AMPK and The Increasing Intelligence of Molecules
From a Primitive Energy Sensor to the Master Guardian of Cellular Energy Long before animals, plants, or the first eukaryotic cells existed, bacteria and archaea already decided the best to use their energy. Every cell continuously judged whether enough ATP was available to build new molecules, or whether scarce resources demanded conservation and repair instead. Early life responded to energy availability, but it did so through many separate, local biochemical sensors rather
jonlieff
Aug 313 min read


The Dance of Adenosine, AMP, ATP, and RNA
Adenosine is in perpetual motion. The aromatic adenine ring continually redistributes its electrons, creating changing electrostatic landscapes that influence how it interacts with neighboring molecules. The ribose sugar flexes between slightly different conformations, altering the molecule's three-dimensional geometry. The bond connecting the base to the sugar rotates, allowing adenosine to present different molecular surfaces to enzymes, receptors, and RNA. Around it, layer
jonlieff
Jul 253 min read


Is This How Life Began?
Adenine––The First Intelligent Molecule Life did not begin with cells, organs, brains, or nervous systems. Some molecules possessed such extraordinary chemical and physical properties that they repeatedly became the foundation for increasingly complex intelligent biological systems. Among them, one molecule stands out above all others—adenine. Perhaps the reason adenine was the first truly intelligent molecule is the remarkable number of ways it can interact with its surround
jonlieff
Jul 46 min read


A Communication System for All Cells
In 1972, a British pharmacologist named Geoffrey Burnstock published a paper proposing that ATP is released from nerve terminals and acts as a neurotransmitter. The scientific establishment's response was a dismissal. The objections were that as the universal energy currency of all living cells, ATP was too ubiquitous to serve as a signal among neurons––it was everywhere, inside everything. That skepticism delayed a medical revolution by two decades. Burnstock continued wor

Jon Lieff
Jul 25 min read


ATP and Adenosine—Fundamental Cellular Communication Signals
For more than a century, neuroscience has been built around a neuron-centered worldview. The heroes of this story are familiar neurotransmitters: dopamine, serotonin, norepinephrine, acetylcholine, glutamate, and GABA. Textbooks describe neurons communicating across synapses in brain circuits using these specialized chemical messengers. The vast ‘connectome’ network of axons and dendrites was believed to determine mental events. Neurons were viewed as the only true informatio

Jon Lieff
Jun 225 min read


Molecular Mind in Cellular Motors 6: The Very Talented Dynein Motor
Dynein is a vastly more complex motor than kinesin. It walks along microtubules carrying vesicles, RNA granules, mitochondria, signaling complexes, and even large full chromosomes. It moves the entire cell nucleus during immune cell movement and manages the extraordinarily complex choreography of chromosome separation during cell division. It is a motor with awareness of what each situation requires. Dynein is enormous. Including its essential additional dynactin complex, i

Jon Lieff
May 285 min read


Molecular Mind and Cellular Motors 5: Kinesin Motors––Walking, Communicating Molecular Creatures
Kinesin is an individual cellular motor made of just four protein chains that senses, navigates, makes decisions, and walks with two feet, step by step like a human. It picks up a variety of cargo, such as vesicles, mitochondria, molecular complexes, or messenger RNA and walks, one deliberate step at a time, along a highway of protein cables toward a precise destination. Walking upright on two legs is rare in nature—humans, ostriches, penguins, kangaroos, and a few others—e

Jon Lieff
May 254 min read
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