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Molecules and molecular clusters inside cells communicate and coordinate their activity, often changing shapes to execute the processes of life. These behaviors lie beyond current scientific description hence we view them as evidence of molecular scale mind.
AMPK and The Increasing Intelligence of Molecules
From a Primitive Energy Sensor to the Master Guardian of Cellular Energy Long before animals, plants, or the first eukaryotic cells existed, bacteria and archaea already decided the best to use their energy. Every cell continuously judged whether enough ATP was available to build new molecules, or whether scarce resources demanded conservation and repair instead. Early life responded to energy availability, but it did so through many separate, local biochemical sensors rather
jonlieff
5 days ago13 min read
mTOR’s Emergence as the Master Cellular Regulator
Increasing Intelligence of mTOR: From a Primitive Survival Kinase to the Master Integrator of Complex Life The story of mTOR shows that biology builds increasingly intelligent molecules not by inventing entirely new molecules, but by continuously expanding the information-processing abilities of existing ones. Today, mTOR (mechanistic Target of Rapamycin) is near the top of the regulatory hierarchy of virtually every human cell. It decides whether cells should grow or shrink,
jonlieff
Jul 266 min read
The Dance of Adenosine, AMP, ATP, and RNA
Adenosine is in perpetual motion. The aromatic adenine ring continually redistributes its electrons, creating changing electrostatic landscapes that influence how it interacts with neighboring molecules. The ribose sugar flexes between slightly different conformations, altering the molecule's three-dimensional geometry. The bond connecting the base to the sugar rotates, allowing adenosine to present different molecular surfaces to enzymes, receptors, and RNA. Around it, layer
jonlieff
Jul 253 min read
What If Atoms Can Think…
If mind exists throughout all of nature, then how would it manifest in the realm of atoms? Would atoms have desires, goals, and plans? What would be their behaviors and personalities? Because their electronic structures are so different, each atom in living matter behaves in remarkably consistent, and different, ways. Therefore it is not difficult to describe them as having distinct personalities. These personalities arise from the fundamental laws of quantum mechanics—th
jonlieff
Jul 186 min read
Is This How Life Began?
Adenine––The First Intelligent Molecule Life did not begin with cells, organs, brains, or nervous systems. Some molecules possessed such extraordinary chemical and physical properties that they repeatedly became the foundation for increasingly complex intelligent biological systems. Among them, one molecule stands out above all others—adenine. Perhaps the reason adenine was the first truly intelligent molecule is the remarkable number of ways it can interact with its surround
jonlieff
Jul 46 min read
A Communication System for All Cells
In 1972, a British pharmacologist named Geoffrey Burnstock published a paper proposing that ATP is released from nerve terminals and acts as a neurotransmitter. The scientific establishment's response was a dismissal. The objections were that as the universal energy currency of all living cells, ATP was too ubiquitous to serve as a signal among neurons––it was everywhere, inside everything. That skepticism delayed a medical revolution by two decades. Burnstock continued wor

Jon Lieff
Jul 25 min read
ATP and Adenosine—Fundamental Cellular Communication Signals
For more than a century, neuroscience has been built around a neuron-centered worldview. The heroes of this story are familiar neurotransmitters: dopamine, serotonin, norepinephrine, acetylcholine, glutamate, and GABA. Textbooks describe neurons communicating across synapses in brain circuits using these specialized chemical messengers. The vast ‘connectome’ network of axons and dendrites was believed to determine mental events. Neurons were viewed as the only true informatio

Jon Lieff
Jun 225 min read
Are Cells Thinking in Light?
For more than a century, biology has largely viewed cellular communication as a chemical process. This chemical view has been very helpful in describing a large number of cellular signaling pathways. However, modern cell biology increasingly reveals a deeper reality. Cells are not simply bags of chemicals. They are highly organized information-processing systems operating across many scales simultaneously. Within every cell, billions of molecules continuously exchange infor

Jon Lieff
Jun 75 min read
Molecular Mind in Cellular Motors 7: The Society of Cell Motors and Tracks
When most people imagine a living cell, they picture a microscopic bag of organic materials. In fact, as described in prior posts, a cell is a vast, organized society whose members constantly communicate, cooperate, negotiate, compete, and adapt to changing conditions. At the center of this society lies a remarkable transportation system: an immense network of molecular tracks, scaffolds, motors, signaling complexes, organelles, and regulatory molecules that continuously exch

Jon Lieff
Jun 55 min read
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