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Adenosine Intelligence Fuels All Molecular Tags
Cells make their largest decisions at a few regulatory hubs: AMPK, which senses energy; mTOR, which decides whether to grow; p53, which guards the genome; and NF-κB, which coordinates inflammation and immunity. These hubs regulate one another in a web rather than a chain of command, but they have something in common. AMPK reads the ratio of AMP and ADP to ATP directly. mTOR checks the supply of S-adenosylmethionine through a dedicated sensor. p53 carries acetyl, methyl, ubiqu
jonlieff
Oct 1511 min read


p53 and mTOR: Distributed Intelligences in the Cell
At first glance, p53 and mTOR appear to represent two very different strategies for regulating cellular behavior. p53 is traditionally viewed as the guardian of the genome, responding to DNA damage by determining whether a cell should pause, repair itself, enter senescence, or die. mTOR is regarded as the master regulator of growth, integrating nutrient availability, energy status, growth factors, oxygen, and mechanical signals to determine whether the cell should build new p
jonlieff
Sep 306 min read


The Life of p53: From Stress Sensor to Guardian of the Genome
p53 is widely known as the “guardian of the genome,” and it is the single most commonly altered protein in human cancer. Yet the modern p53 molecule did not appear all at once with the rise of multicellular animals. Over more than a billion years, it evolved from a simple environmental stress sensor with an on/off switch into one of the most sophisticated information-processing molecules in living cells — a system that gathers signals from dozens of independent pathways and s
jonlieff
Sep 2222 min read


The Life of mTOR : the Cell's Coordinator of Growth, Energy, Construction, and Survival
mTOR Decision-Making System A Molecular System That Makes Decisions Among the thousands of molecular systems operating inside a human cell, few coordinate as many different activities as mTOR. Its name, mechanistic target of rapamycin, makes it sound like simply another enzyme. Technically, mTOR is a protein kinase: it transfers phosphate groups to other proteins and thereby changes their behavior. But describing mTOR merely as a kinase is like describing a brain as a collect
jonlieff
Sep 1437 min read


The Dance of mTOR
How Molecular Motion Creates the Master Regulator of Cellular Growth At first glance, mTOR appears to be an enormous molecular machine built for stability. Composed of more than 2,500 amino acids and weighing nearly 300 kilodaltons, it is one of the largest protein kinases in biology. Yet beneath its impressive size lies a remarkable truth: mTOR is never still. Rather than functioning as a rigid enzyme, it exists as an extraordinarily dynamic molecular system whose continual
jonlieff
Sep 45 min read


AMPK and The Increasing Intelligence of Molecules
From a Primitive Energy Sensor to the Master Guardian of Cellular Energy Long before animals, plants, or the first eukaryotic cells existed, bacteria and archaea already decided the best to use their energy. Every cell continuously judged whether enough ATP was available to build new molecules, or whether scarce resources demanded conservation and repair instead. Early life responded to energy availability, but it did so through many separate, local biochemical sensors rather
jonlieff
Aug 313 min read


mTOR’s Emergence as the Master Cellular Regulator
Increasing Intelligence of mTOR: From a Primitive Survival Kinase to the Master Integrator of Complex Life The story of mTOR shows that biology builds increasingly intelligent molecules not by inventing entirely new molecules, but by continuously expanding the information-processing abilities of existing ones. Today, mTOR (mechanistic Target of Rapamycin) is near the top of the regulatory hierarchy of virtually every human cell. It decides whether cells should grow or shrink,
jonlieff
Jul 266 min read


Are Cells Thinking in Light?
For more than a century, biology has largely viewed cellular communication as a chemical process. This chemical view has been very helpful in describing a large number of cellular signaling pathways. However, modern cell biology increasingly reveals a deeper reality. Cells are not simply bags of chemicals. They are highly organized information-processing systems operating across many scales simultaneously. Within every cell, billions of molecules continuously exchange infor

Jon Lieff
Jun 75 min read
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